WebJan 1, 2024 · HCC is predominantly induced by chronic viral hepatitis and alcoholism [5]. However, HCC may also develop due to other various factors, including hyperglycemia, … WebAug 10, 2024 · enrichR can be installed from Github or soon from CRAN. Github library(devtools) install_github("wjawaid/enrichR") CRAN The package can be downloaded from CRAN using: install.packages("enrichR") Usage example enrichR provides an interface to the Enrichr database [@kuleshov_enrichr:_2016] hosted at …
PCSK9, a novel immune and ferroptosis related gene in abdominal …
WebMar 15, 2024 · Cell type-specific ageing gene signature and pathway changes correlated with ageing. We next investigated the cell type-specific genes with expression that correlate with age, using all samples with age metadata (Figure 3B). Among the annotated cell types, GMP cells had the largest number of age-associated differentially expressed genes … Webenrich The enrich function performs cell type enrichment analysis using signatures from annotation databases and cluster markers. It first computes a contingency table for every pair of comparison between cell-type annotations and cluster IDs and then performs a Fisher's exact test of independence. Input parameters is a narrative essay in past tense
Using R for EnrichR analysis - Bioconductor
WebApr 13, 2024 · The lists of the top 25 genes classified as hubs in their respective PPIs were inputted to Enrichr’s web-based tools for Gene Ontology enrichment analysis [37, 38] ... that the molecular alterations provoked by ZIKV may vary at the transcriptome level depending on the evaluated cell type, strain of the virus, viral load, and the time point in ... WebDec 27, 2024 · Enrichr, a gene list enrichment analysis tool, was utilized for the functional enrichment of clusters. Results A total of 12, 2, and 4 functional clusters from 619, 52, and 119 DEGs were determined in the lung, peripheral blood mononuclear cell (PBMC), and skin tissues, respectively. WebMay 18, 2024 · Seven general cell types (CT) are annotated in the original paper: ... A Clustergrammer heatmap showing the expression values of all genes of this regulon and cell type. (10) The Enrichr link to the enrichment analysis of this regulon. (11) Bulk ATAC peak enrichment test results. (12) Coverage of regulon genes and the topologically … is an aromatic a functional group